PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1414_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 296aa    MW: 31297.3 Da    PI: 9.5557
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1414_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-073660226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   k ++C  f+ t  C++Gd+C+F H 
  Neem_1414_f_3 36 KSKPCTKFYSTSGCPFGDSCHFLHH 60
                   7789********************6 PP

2zf-CCCH23.21.2e-07101126227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+ C+ f     Ck+Gd+C+FaHg+
  Neem_1414_f_3 101 KTRMCNKFNSAEGCKFGDKCHFAHGE 126
                    899*******99************96 PP

3zf-CCCH375.9e-12263287126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt+lC +fa+ G C +GdrC+FaHg
  Neem_1414_f_3 263 FKTKLCENFAK-GSCTFGDRCHFAHG 287
                    69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1593462IPR000571Zinc finger, CCCH-type
SMARTSM003560.013461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-63561IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-63660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-93660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.40499127IPR000571Zinc finger, CCCH-type
SMARTSM003560.01899126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-13100130IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.16E-15164240IPR004088K Homology domain, type 1
SMARTSM003227.0E-13169239IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.9E-16169238IPR004088K Homology domain, type 1
PROSITE profilePS5008414.739170234IPR004088K Homology domain, type 1
PfamPF000131.4E-12172236IPR004088K Homology domain, type 1
CDDcd001053.43E-14174234No hitNo description
Gene3DG3DSA:4.10.1000.109.5E-16258293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8261293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.596262289IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-8262288IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTRKRTMSE AGANANGSVK KFKHETDSLS TGVGSKSKPC TKFYSTSGCP FGDSCHFLHH  60
VPGGYNTVAQ MMNLPPAVPA SSRNMATAPP SSNGSSMQTV KTRMCNKFNS AEGCKFGDKC  120
HFAHGEWELG KPFAPSHDDP HPHAMGGVPS RMGSRYEPTV PGAAASFGAS ATAKISVDAS  180
LAGAIIGKGG VNSKQICRQT GAKLSIRDHE TDPSLKNIEL EGSFEQIKQA SAMVRELIVR  240
IGPGHAKGHG TPGGPAPHER NNFKTKLCEN FAKGSCTFGD RCHFAHGAAE LRKTVV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429867.11e-160hypothetical protein CICLE_v10012360mg
RefseqXP_006429869.11e-160hypothetical protein CICLE_v10012360mg
RefseqXP_006429870.11e-160hypothetical protein CICLE_v10012360mg
SwissprotQ7F8R01e-111C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067FU611e-160A0A067FU61_CITSI; Uncharacterized protein
TrEMBLV4SVR31e-160V4SVR3_9R
STRINGVIT_08s0007g06400.t011e-155(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-58C3H family protein